nf-core/abricate/run @ 0.0.0-0c7146d
Screen assemblies for antimicrobial resistance against multiple databases
| Tool | Description | Homepage |
|---|---|---|
| abricate | Mass screening of contigs for antibiotic resistance genes | https://github.com/tseemann/abricate |
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
assembly
file
|
FASTA, GenBank or EMBL formatted file
*.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz,gbk,gbk.gz,embl,embl.gz}
|
databasedir
directory
|
Optional location of local copy of database files, possibly with custom databases set up with `abricate --setupdb`
*/
|
|---|
Output
2 channels
#1
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Tab-delimited report of results
*.{txt}
|
#2
versions_abricate
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
abricate
string
|
The tool name |
abricate --version | sed 's/^.* //'
eval
|
The expression to obtain the version of the tool |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:41:14 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fabricate%2Frun/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/abricate/run/blobs/sha256:cf25aa84ae978c7ac8ced0328c00ffecff25d8b387eca4311f92289738cd23a6 |
| Size | 2.5 KB |
| Checksum | sha256:cf25aa84ae978c7ac8ced0328c00ffecff25d8b387eca4311f92289738cd23a6 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:14 (UTC) | PUBLISHED | 4 | 2.5 KB |