nf-core/abricate/summary @ 0.0.0-0c7146d
Screen assemblies for antimicrobial resistance against multiple databases
| Tool | Description | Homepage |
|---|---|---|
| abricate | Mass screening of contigs for antibiotic resistance genes | https://github.com/tseemann/abricate |
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reports
file
|
FASTA, GenBank or EMBL formatted file
*.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz,gbk,gbk.gz,embl,embl.gz}
|
Output
2 channels
#1
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Tab-delimited report of aggregated results
*.{txt}
|
#2
versions_abricate_summary
tuple
${task.process}
string
|
The name of the process |
|---|---|
abricate
string
|
The name of the tool |
abricate --version 2>&1 | sed 's/^.*abricate //'
eval
|
The expression to obtain the version of the tool |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:41:16 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fabricate%2Fsummary/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/abricate/summary/blobs/sha256:340b43769b10032c1fbd0c2c4fecb2b0e9412520694c7c588558c59697e8e7fd |
| Size | 2.3 KB |
| Checksum | sha256:340b43769b10032c1fbd0c2c4fecb2b0e9412520694c7c588558c59697e8e7fd |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:16 (UTC) | PUBLISHED | 2 | 2.3 KB |