nf-core/agat/convertbed2gff @ 0.0.0-0c7146d
Takes a bed12 file and converts to a GFF3 file
| Tool | Description | Homepage |
|---|---|---|
| agat | AGAT is a toolkit for manipulation and getting information from GFF/GTF files | https://github.com/NBISweden/AGAT |
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bed
file
|
Input bed12 file
*.bed
|
Output
2 channels
#1
gff
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.gff
file
|
Output GFF3 file
*.{gff}
|
#2
versions_agat
tuple
${task.process}
string
|
The name of the process |
|---|---|
agat
string
|
The name of the tool |
agat --version | sed 's/v//'
eval
|
The expression to obtain the version of the tool |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:41:30 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fagat%2Fconvertbed2gff/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/agat/convertbed2gff/blobs/sha256:c021a46d6311411060e5bed8c4ac0c8e1cee10f7d5a9d811befda5bea7cfd855 |
| Size | 2.1 KB |
| Checksum | sha256:c021a46d6311411060e5bed8c4ac0c8e1cee10f7d5a9d811befda5bea7cfd855 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:30 (UTC) | PUBLISHED | 4 | 2.1 KB |