nf-core/agat/convertgff2bed @ 0.0.0-0c7146d
Takes a GFF3 file and converts to a bed12 file
| Tool | Description | Homepage |
|---|---|---|
| agat | Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format. | https://agat.readthedocs.io/en/latest/ |
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. `[ id:'sample1' ]` |
|---|---|
gff
file
|
Input GFF3 file
*.{gff}
|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. `[ id:'sample1' ]` |
|---|---|
*.bed
file
|
Output bed12 file
*.bed
|
#2
versions_agat
tuple
${task.process}
string
|
The name of the process |
|---|---|
agat
string
|
The name of the tool |
agat --version | sed 's/v//'
eval
|
The expression to obtain the version of the tool |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:41:32 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fagat%2Fconvertgff2bed/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/agat/convertgff2bed/blobs/sha256:2abeb55777a1a4a3a4a5069745e661821d4c7b07d1b84b6d0710a5c16c297b09 |
| Size | 2.2 KB |
| Checksum | sha256:2abeb55777a1a4a3a4a5069745e661821d4c7b07d1b84b6d0710a5c16c297b09 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:32 (UTC) | PUBLISHED | 4 | 2.2 KB |