nf-core/agat/spaddintrons @ 0.0.0-0c7146d
Add intron features to gtf/gff file without intron features.
| Tool | Description | Homepage |
|---|---|---|
| agat | Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format. | https://agat.readthedocs.io/en/latest/ |
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gff
file
|
Input gtf/gff file
*.{gff,gff3,gtf}
|
config
file
|
Optional input agat config file
*.{yaml,yml}
|
|---|
Output
2 channels
#1
gff
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
${output}
file
|
Output gff3 file with introns
*.gff
|
#2
versions_agat
tuple
${task.process}
string
|
The name of the process |
|---|---|
agat
string
|
The name of the tool |
agat --version | sed 's/v//'
eval
|
The expression to obtain the version of the tool |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:41:40 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fagat%2Fspaddintrons/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/agat/spaddintrons/blobs/sha256:47d74e01c86f8ece16a4ab0f798a8b3b3f0de842165027fe210a7bdcb90c82e7 |
| Size | 2.2 KB |
| Checksum | sha256:47d74e01c86f8ece16a4ab0f798a8b3b3f0de842165027fe210a7bdcb90c82e7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:40 (UTC) | PUBLISHED | 1 | 2.2 KB |