nf-core/ampir @ 0.0.0-6c4ed3a
Summary
A fast and user-friendly method to predict antimicrobial peptides (AMPs) from any given size protein dataset. ampir uses a supervised statistical machine learning approach to predict AMPs.
Get started
Add the following snippet to your workflow script to include this module.
include { AMPIR } from 'nf-core/ampir'
License
MIT License
Name
|
AMPIR |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
faa
file
|
FASTA file containing amino acid sequences *.{faa,fasta}
|
model
string
|
Built-in model for AMP prediction {precursor,mature}
|
|---|
min_length
integer
|
Minimum protein length for which predictions will be generated [0-9]+
|
|---|
min_probability
float
|
Cut-off for AMP prediction [0-9].[0-9]+
|
|---|
amps_faa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.faa
file
|
File containing AMP predictions in amino acid FASTA format *.{faa}
|
amps_tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
File containing AMP predictions in TSV format *.tsv
|
versions_ampir
tuple
${task.process}
string
|
The name of the process |
|---|---|
ampir
string
|
The name of the tool |
Rscript -e "library(ampir); cat(paste((unlist(packageVersion('ampir'))), collapse = '.'))"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ampir | A toolkit to predict antimicrobial peptides from protein sequences on a genome-wide scale. | https://github.com/Legana/ampir |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:02:05 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fampir/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ampir/blobs/sha256:ac0e200306a182f2a2b31e8b6a85798bb2baec0b32a42e1b70c8e6de4fd3281e |
| Size | 3.1 KB |
| Checksum | sha256:ac0e200306a182f2a2b31e8b6a85798bb2baec0b32a42e1b70c8e6de4fd3281e |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:05 (UTC) | 3 | 3.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:36 (UTC) | 4 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:42:12 (UTC) | 2 | 3.1 KB |