nf-core/annosine @ 0.0.0-6c4ed3a
Summary
Accelerating de novo SINE annotation in plant and animal genomes
Get started
Add the following snippet to your workflow script to include this module.
include { ANNOSINE } from 'nf-core/annosine'
License
MIT License
Process
Name
|
ANNOSINE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Input genome assembly *.{fasta,fa,fsa}
|
mode
integer
|
Choose the running mode of the program. 1--Homology-based method; 2--Structure-based method; 3--Hybrid of homology-based and structure-based method. |
|---|
Output
3 channels
#1
fa
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.fa
map
|
Non-redundant SINE library with serial number *.{fa}
|
#2
log
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.log
file
|
AnnoSINE_v2 log file *.{log}
|
#3
versions_annosine
tuple
${task.process}
string
|
The name of the process |
|---|---|
annosine
string
|
The name of the tool |
pip show annosine2 | sed -n 's/Version: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| annosine | AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes | https://github.com/liaoherui/AnnoSINE_v2 |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:02:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fannosine/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/annosine/blobs/sha256:cd1511fe3a41180c89b3772b5b0a6376804e29b8d902229f6a7466e4d3ea2ea6 |
| Size | 2.7 KB |
| Checksum | sha256:cd1511fe3a41180c89b3772b5b0a6376804e29b8d902229f6a7466e4d3ea2ea6 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:26 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:46 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:42:43 (UTC) | 3 | 2.7 KB |