nf-core/art/illumina @ 0.0.0-6c4ed3a
Summary
Simulation tool to generate synthetic Illumina next-generation sequencing reads
Get started
Add the following snippet to your workflow script to include this module.
include { ART_ILLUMINA } from 'nf-core/art/illumina'
License
MIT License
Name
|
ART_ILLUMINA |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
FASTA file of input DNA/RNA reference *.{fasta,fa}
|
sequencing_system
string
|
The name of Illumina sequencing system of the built-in profile used for simulation |
|---|
fold_coverage
integer
|
The fold of read coverage to be simulated or number of reads/read pairs generated for each amplicon |
|---|
read_length
integer
|
The length of reads to be simulated |
|---|
aln
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.aln
file
|
OPTIONAL Alignment file of the simulated reads. Enabled by default, to disable, use -na/--noALN. *.aln
|
sam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sam
file
|
OPTIONAL Alignment file in SAM format of the simulated reads. Enabled with -sam/--samout. *.sam
|
fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fq.gz
file
|
Simulated reads *.fq.gz
|
versions_art_illumina
tuple
${task.process}
string
|
The name of the process |
|---|---|
art
string
|
The name of the tool |
2016.06.05
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| art | ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. | https://www.niehs.nih.gov/research/resources/software/biostatistics/art/index.cfm |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:02:46 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fart%2Fillumina/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/art/illumina/blobs/sha256:e602d859c84a7b60dad0d3848d61ba4ad263d525a118ece5c680f5a0c94dda57 |
| Size | 3.7 KB |
| Checksum | sha256:e602d859c84a7b60dad0d3848d61ba4ad263d525a118ece5c680f5a0c94dda57 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:46 (UTC) | 3 | 3.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:02 (UTC) | 4 | 3.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:18 (UTC) | 3 | 3.7 KB |