nf-core/bcftools/reheader @ 0.0.0-6c4ed3a
Summary
Reheader a VCF file
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_REHEADER } from 'nf-core/bcftools/reheader'
License
MIT License
Process
Name
|
BCFTOOLS_REHEADER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF/BCF file *.{vcf.gz,vcf,bcf}
|
header
file
|
New header to add to the VCF *.{header.txt}
|
samples
file
|
File containing sample names to update (one sample per line) *.{samples.txt}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fai
file
|
Fasta index to update header sequences with *.{fai}
|
Output
3 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{vcf,vcf.gz,bcf,bcf.gz}
file
|
VCF with updated header, bgzipped per default *.{vcf,vcf.gz,bcf,bcf.gz}
|
#2
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{csi,tbi}
file
|
Index of VCF with updated header *.{csi,tbi}
|
#3
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| reheader | Modify header of VCF/BCF files, change sample names. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:05:14 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Freheader/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bcftools/reheader/blobs/sha256:b941151f13767d02c747c2b898c3fc2b70c0b323d2d599f9fdf0ca4e3af19d99 |
| Size | 4.2 KB |
| Checksum | sha256:b941151f13767d02c747c2b898c3fc2b70c0b323d2d599f9fdf0ca4e3af19d99 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:05:14 (UTC) | 3 | 4.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:46:20 (UTC) | 3 | 4.2 KB |