nf-core/caalm/downloadmodels @ 0.0.0-6c4ed3a
Summary
Downloads the CAALM model weights from HuggingFace Hub (lczong/CAALM) into a local models/ directory. The downloaded directory is used as input to the CAALM_CAALM annotation module for CAZyme prediction.
Get started
Add the following snippet to your workflow script to include this module.
include { CAALM_DOWNLOADMODELS } from 'nf-core/caalm/downloadmodels'
License
MIT License
Name
|
CAALM_DOWNLOADMODELS |
|---|
models
tuple
models/level0
directory
|
Directory containing the Level 0 (binary CAZyme detection) model files downloaded from HuggingFace Hub (lczong/CAALM). models/level0
|
|---|---|
models/level1
directory
|
Directory containing the Level 1 (CAZy class assignment) model files downloaded from HuggingFace Hub (lczong/CAALM). models/level1
|
models/level2
directory
|
Directory containing the Level 2 (CAZy family assignment) model files downloaded from HuggingFace Hub (lczong/CAALM), including the FAISS index, reference database, and model weights. models/level2
|
versions_python
tuple
${task.process}
string
|
The name of the process |
|---|---|
python
string
|
The name of the tool |
python --version | sed 's/Python //'
eval
|
The expression to obtain the version of the tool |
versions_huggingface_hub
tuple
${task.process}
string
|
The name of the process |
|---|---|
huggingface_hub
string
|
The name of the tool |
python -c 'import huggingface_hub; print(huggingface_hub.__version__)'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| huggingface_hub | huggingface_hub is a Python library for interacting with the Hugging Face Hub, providing utilities for downloading and uploading models, datasets, and spaces. | https://github.com/huggingface/huggingface_hub |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:21 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcaalm%2Fdownloadmodels/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/caalm/downloadmodels/blobs/sha256:f8fd274311ceb6617a10da5b6b80b32b559a81513f26a8a0c91e471f32d95fef |
| Size | 2.4 KB |
| Checksum | sha256:f8fd274311ceb6617a10da5b6b80b32b559a81513f26a8a0c91e471f32d95fef |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:21 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:50:09 (UTC) | 5 | 2.4 KB |