nf-core/centrifuger/build @ 0.0.0-6c4ed3a
Summary
Build centrifuger database for taxonomic profiling
Get started
Add the following snippet to your workflow script to include this module.
include { CENTRIFUGER_BUILD } from 'nf-core/centrifuger/build'
License
MIT License
Name
|
CENTRIFUGER_BUILD |
|---|
meta
map
|
Groovy Map containing sample information. e.g. |
|---|---|
references
file
|
One or more reference genome sequence files in FASTA format. These are staged into the work directory and used to generate.a renference list file (used with -l option). |
taxonomy_nodes
file
|
File describing parent-child relationships of a taxonomic tree in NCBI nodes.dmp format |
|---|
taxonomy_names
file
|
File describing individual members of a taxonomic tree in NCBI names.dmp format |
|---|
conversion_table
file
|
Required: a tab-seperated file, mapping sequence IDs to taxonomy IDs. |
|---|
db
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
Centrifuger database index files ${prefix}
|
versions_centrifuger
tuple
${task.process}
string
|
The name of the process |
|---|---|
centrifuger
string
|
The name of the tool |
centrifuger -v 2>&1 | sed 's/Centrifuger v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| centrifuger | Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification. | https://github.com/mourisl/centrifuger |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:08:54 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcentrifuger%2Fbuild/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/centrifuger/build/blobs/sha256:9bbb857c2bc5295f4318f7dfb84851541360fb09c07c7fa9599d132f4462a2f9 |
| Size | 2.8 KB |
| Checksum | sha256:9bbb857c2bc5295f4318f7dfb84851541360fb09c07c7fa9599d132f4462a2f9 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:54 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:44 (UTC) | 3 | 2.8 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:41 (UTC) | 3 | 2.8 KB | |
| 0.0.0-02a6b4c | 13 Apr 2026 15:00:15 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:51:20 (UTC) | 3 | 2.7 KB |