Nextflow Registry | nf-core/chromograph@0.0.0-6c4ed3a

nf-core/chromograph @ 0.0.0-6c4ed3a

Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.

chromosome_visualization bed wig png

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @ramprasadn

Maintainers: @ramprasadn

Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.

Add the following snippet to your workflow script to include this module.

include { CHROMOGRAPH } from 'nf-core/chromograph'

MIT License

Process

`Name`	`CHROMOGRAPH`

Input 7 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`autozyg` file	Bed file containing the regions of autozygosity

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`coverage` file	Wig file containing the coverage information

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`exome` file	Bed file containing the coverage for exome.

#4 tuple

`meta4` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fracsnp` file	Wig file containing the fraction of homozygous SNPs

#5 tuple

`meta5` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`ideogram` file	Bed file containing information necessary for ideogram plots. Format ['chrom', 'start', 'end', 'name', 'gStain']

#6 tuple

`meta6` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`regions` file	Bed file containing UPD regions

#7 tuple

`meta7` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`sites` file	Bed file containing UPD sites

Output 2 channels

#1 plots tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.png` file	Plot(s) in PNG format

#2 versions_chromograph tuple

`${task.process}` string	The process the versions were collected from
`chromograph` string	The tool name
`chromograph --version \| sed 's/.* //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
chromograph	Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.	https://github.com/Clinical-Genomics/chromograph

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:09:12 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fchromograph/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/chromograph/blobs/sha256:5878a699a955e92469635878e69a2435b28d835e835185d4bd6a75b3a143ee66
Size	3.7 KB
Checksum	sha256:5878a699a955e92469635878e69a2435b28d835e835185d4bd6a75b3a143ee66