nf-core/cooler/makebins @ 0.0.0-6c4ed3a
Summary
Generate fixed-width genomic bins
Get started
Add the following snippet to your workflow script to include this module.
include { COOLER_MAKEBINS } from 'nf-core/cooler/makebins'
License
MIT License
Process
Name
|
COOLER_MAKEBINS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
chromsizes
file
|
Path to a chromsizes file. |
cool_bin
integer
|
Resolution (bin size) in base pairs |
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.bed
file
|
Genome segmentation at a fixed resolution as a BED file. *.bed
|
#2
versions_cooler
tuple
${task.process}
string
|
The name of the process |
|---|---|
cooler
string
|
The name of the tool |
cooler --version 2>&1 | sed "s/cooler, version //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cooler | Sparse binary format for genomic interaction matrices | https://open2c.github.io/cooler/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:24 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcooler%2Fmakebins/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cooler/makebins/blobs/sha256:cfc572a1d96d10cf016921460acbb8c67fb47952bfd970c492e7a18b59629077 |
| Size | 2.2 KB |
| Checksum | sha256:cfc572a1d96d10cf016921460acbb8c67fb47952bfd970c492e7a18b59629077 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:24 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:54 (UTC) | 2 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:09 (UTC) | 3 | 2.2 KB |