nf-core/cramino @ 0.0.0-6c4ed3a
Summary
Quality assessment of long-read bam files using cramino.
Get started
Add the following snippet to your workflow script to include this module.
include { CRAMINO } from 'nf-core/cramino'
License
MIT License
Process
Name
|
CRAMINO |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
BAM/CRAM file *.{bam,cram}
|
bai
file
|
Index of BAM/CRAM file *.{bai,crai,csi}
|
Output
3 channels
#1
arrow
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.arrow
file
|
Arrow file containing summary statistics of the long-read data *.arrow
|
#2
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.txt
file
|
Text file containing summary statistics of the long-read data *.txt
|
#3
versions_cramino
tuple
${task.process}
string
|
The name of the process |
|---|---|
cramino
string
|
The name of the tool |
cramino -V | sed 's/cramino //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cramino | A tool for very fast quality assessment of long read cram/bam files. | https://github.com/wdecoster/cramino |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:47 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcramino/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cramino/blobs/sha256:ecbfdc758a176ce10f4b2c911f9c6a277cc9d080f82996ce88abeab2c43370ff |
| Size | 2.8 KB |
| Checksum | sha256:ecbfdc758a176ce10f4b2c911f9c6a277cc9d080f82996ce88abeab2c43370ff |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:47 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:09 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:41 (UTC) | 4 | 2.8 KB |