nf-core/crisprcleanr/normalize @ 0.0.0-6c4ed3a
Summary
remove false positives of functional crispr genomics due to CNVs
Get started
Add the following snippet to your workflow script to include this module.
include { CRISPRCLEANR_NORMALIZE } from 'nf-core/crisprcleanr/normalize'
License
MIT License
Process
Name
|
CRISPRCLEANR_NORMALIZE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
count_file
file
|
sgRNA raw counts *.tsv
|
library_file
file
|
sgRNA library *.tsv
|
min_reads
integer
|
Minimum number of reads |
|---|
min_targeted_genes
integer
|
Minimum number of targeted genes |
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
norm_count_file
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_norm_table.tsv
file
|
normalized count file *.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| crisprcleanr | Analysis of CRISPR functional genomics, remove false positive due to CNVs. | https://github.com/francescojm/CRISPRcleanR |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:48 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcrisprcleanr%2Fnormalize/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/crisprcleanr/normalize/blobs/sha256:c13866d561fbb2cf07365e1ded70dfd9ccd0481d5021a71e1c3d81d5329db246 |
| Size | 2.9 KB |
| Checksum | sha256:c13866d561fbb2cf07365e1ded70dfd9ccd0481d5021a71e1c3d81d5329db246 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:48 (UTC) | 3 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:10 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:54:43 (UTC) | 3 | 2.8 KB |