Nextflow Registry | nf-core/custom/filterdifferentialtable@0.0.0-c4ed7fd

nf-core/custom/filterdifferentialtable @ 0.0.0-c4ed7fd

Filters a differential expression table based on logFC and adjusted p-value thresholds

Latest version: 0.0.0-c4ed7fd

Total downloads: 8

Source: nf-core/modules

Authors: @pinin4fjords @WackerO

Maintainers: @pinin4fjords @WackerO

Filters a differential expression table based on logFC and adjusted p-value thresholds

Add the following snippet to your workflow script to include this module.

include { CUSTOM_FILTERDIFFERENTIALTABLE } from 'nf-core/custom/filterdifferentialtable'

MIT License

Process

`Name`	`CUSTOM_FILTERDIFFERENTIALTABLE`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`input_file` file	Input differential expression table (CSV, TSV, or TXT format) `*.{csv,tsv,txt}`

#2 tuple

`logfc_column` string	Name of the column containing log fold change values
`fc_threshold` float	Fold change threshold for filtering
`fc_cardinality` string	Operator to compare the fold change values with the threshold. Valid values are: ">=", "<=", ">", "<".

#3 tuple

`stat_column` string	Name of the column containing the significance statistic values (eg. adjusted p-values).
`stat_threshold` float	Statistic threshold for filtering
`stat_cardinality` string	Operator to compare the column values with the threshold. Valid values are: ">=", "<=", ">", "<".

Output 4 channels

#1 filtered tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_filtered.tsv` file	Filtered differential expression table `*_filtered.tsv`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 filtered_up tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_filtered_up.tsv` file	Filtered differential expression table for overexpressed genes `*_filtered_up.tsv`

#4 filtered_down tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_filtered_down.tsv` file	Filtered differential expression table for underexpressed genes `*_filtered_down.tsv`

Tool	Description	Homepage
pandas	Python library for data manipulation and analysis	https://pandas.pydata.org/

Version	0.0.0-c4ed7fd
Commit ID	c4ed7fdd281d290c622c5d93fa173effc0217fdb
Release Date	27 Apr 2026 15:00:11 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Ffilterdifferentialtable/0.0.0-c4ed7fd/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/custom/filterdifferentialtable/blobs/sha256:15cfdcbd07056144b3a3ccf6b6545e5bed7d361744592af869d62f30eb6fb86f
Size	3.7 KB
Checksum	sha256:15cfdcbd07056144b3a3ccf6b6545e5bed7d361744592af869d62f30eb6fb86f
Downloads	0

Version	Date	Status	Downloads	Size
0.0.0-c4ed7fd	27 Apr 2026 15:00:11 (UTC)		0	3.7 KB
0.0.0-6c4ed3a	23 Apr 2026 15:12:0