nf-core/custom/tabulartogseachip @ 0.0.0-c4ed7fd
Summary
Make a GSEA class file (.chip) from tabular inputs
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_TABULARTOGSEACHIP } from 'nf-core/custom/tabulartogseachip'
License
MIT License
Name
|
CUSTOM_TABULARTOGSEACHIP |
|---|
meta
map
|
Groovy Map containing data information. This can be used at the workflow level to pass optional parameters to the module. [id: 'test', ...] |
|---|---|
tabular
file
|
Tabular (NOTE that for the moment it only works for TSV file) containing a column with the features ids, and another column with the features symbols. *.{tsv}
|
id
string
|
The name of the column containing feature ids |
|---|---|
symbol
string
|
The name of the column containing feature symbols |
chip
tuple
meta
map
|
Groovy Map containing metadata e.g. [ id:'test', ... ] |
|---|---|
*.chip
file
|
A categorical class format file (.chip) as defined by the Broad documentation at https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats *.chip
|
versions_gawk
tuple
${task.process}
string
|
The name of the process |
|---|---|
gawk
string
|
The name of the tool |
gawk --version 2>&1 | sed '1!d;s/^.*GNU Awk //; s/, .*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| custom | Make a GSEA annotation file (.chip) from tabular inputs | n/a |
| Version | 0.0.0-c4ed7fd |
|---|---|
| Commit ID | c4ed7fdd281d290c622c5d93fa173effc0217fdb |
| Release Date | 27 Apr 2026 15:00:12 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Ftabulartogseachip/0.0.0-c4ed7fd/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/custom/tabulartogseachip/blobs/sha256:62d4c6b580415dccc8b0bec83d2046eefedb99dcb44c44c73835989c6f43bf32 |
| Size | 2.7 KB |
| Checksum | sha256:62d4c6b580415dccc8b0bec83d2046eefedb99dcb44c44c73835989c6f43bf32 |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-c4ed7fd | 27 Apr 2026 15:00:12 (UTC) | 0 | 2.7 KB | |
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:18 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:36 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:25 (UTC) | 3 | 2.6 KB |