nf-core/deeptools/alignmentsieve @ 0.0.0-6c4ed3a
Summary
This tool filters alignments in a BAM/CRAM file according the the specified parameters.
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_ALIGNMENTSIEVE } from 'nf-core/deeptools/alignmentsieve'
License
MIT License
Process
Name
|
DEEPTOOLS_ALIGNMENTSIEVE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
BAM file *.{bam}
|
input_index
file
|
BAM index file *.{bai}
|
Output
4 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_as.bam
file
|
BAM file *.bam
|
#2
logs
*_log.txt
file
|
TXT file *.txt
|
|---|
#3
versions_samtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
samtools
string
|
The name of the tool |
samtools version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of the tool |
#4
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
alignmentSieve --version | sed "s/alignmentSieve //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | https://deeptools.readthedocs.io/en/develop/content/tools/alignmentSieve.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:13:48 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Falignmentsieve/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deeptools/alignmentsieve/blobs/sha256:1747ed45b487363a43c2ec7c10ee0448cc7667dd2652e2f220f82d67229d44c1 |
| Size | 2.6 KB |
| Checksum | sha256:1747ed45b487363a43c2ec7c10ee0448cc7667dd2652e2f220f82d67229d44c1 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:13:48 (UTC) | 4 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:00 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:56:54 (UTC) | 2 | 2.6 KB |