nf-core/deeptools/multibamsummary @ 0.0.0-6c4ed3a
Summary
Computes read coverage for genomic regions (bins) across the entire genome.
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_MULTIBAMSUMMARY } from 'nf-core/deeptools/multibamsummary'
License
MIT License
Process
Name
|
DEEPTOOLS_MULTIBAMSUMMARY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bams
file
|
One or more BAM files *.{bam}
|
bais
file
|
Corresponding BAM file indexes *.bam.bai
|
labels
string
|
User specified labels instead of default labels (file names). |
#2
tuple
meta2
map
|
Groovy Map containing blacklist metadata e.g. [ id:'blacklist' ] |
|---|---|
blacklist
file
|
BED/GTF file containing regions to exclude from analysis *.{bed,gtf}
|
Output
2 channels
#1
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.npz
file
|
compressed numpy array of read coverage data used by plotCorrelation and plotPCA deeptool utilities all_bam.bamSummary.npz
|
#2
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
multiBamSummary --version | sed "s/multiBamSummary //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:13:53 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fmultibamsummary/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deeptools/multibamsummary/blobs/sha256:1085b05fe3d91c63460fd0c905abbbcfb7d84e5b681b6cc32d8663d524555ba2 |
| Size | 2.7 KB |
| Checksum | sha256:1085b05fe3d91c63460fd0c905abbbcfb7d84e5b681b6cc32d8663d524555ba2 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:13:53 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:05 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:57:01 (UTC) | 3 | 2.7 KB |