Nextflow Registry | nf-core/dysgu/run@0.0.0-6c4ed3a

nf-core/dysgu/run @ 0.0.0-6c4ed3a

Dysgu calls structural variants (SVs) from mapped sequencing reads. It is designed for accurate and efficient detection of structural variations.

structural variants sv vcf

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @famosab @poddarharsh15

Maintainers: @poddarharsh15 @nvnieuwk

Dysgu calls structural variants (SVs) from mapped sequencing reads. It is designed for accurate and efficient detection of structural variations.

Add the following snippet to your workflow script to include this module.

include { DYSGU_RUN } from 'nf-core/dysgu/run'

MIT License

Process

`Name`	`DYSGU_RUN`

Input 7 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`input` file	Input BAM file `*.{bam,cram}`
`index` file	BAM index file `*.{bai,crai}`

#2 tuple

`meta2` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`fasta` file	Genome reference FASTA file `*.{fa,fasta}`

#3 tuple

`meta3` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`fai` file	Genome reference FASTA index file `*.{fa.fai,fasta.fai}`

#4 tuple

`meta4` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`sites` file	Known sites VCF file `*.{vcf,vcf.gz}`

#5 tuple

`meta5` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`bed` file	Regions to include BED file `*.bed`

#6 tuple

`meta6` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`search_bed` file	Regions to search BED file `*.bed`

#7 tuple

`meta7` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`exclude_bed` file	Regions to exclude BED file `*.bed`

Output 3 channels

#1 tbi tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`*.vcf.gz.tbi` file	The index of the BCF/VCF file `*.vcf.gz.tbi`

#2 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`*.vcf.gz` file	VCF file with identified structural variants `*.{vcf.gz}`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
dysgu	Structural variant caller for mapped sequencing data	https://github.com/kcleal/dysgu

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:14:32 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fdysgu%2Frun/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/dysgu/run/blobs/sha256:fdaf9354509a7f29f7a798036edcd662700e29bb760e969623246607cf2cc9d6