Nextflow Registry | nf-core/fastplong@0.0.0-6c4ed3a

nf-core/fastplong @ 0.0.0-6c4ed3a

Perform adapter/quality trimming and QC on long sequencing reads (ONT, PacBio, etc.)

trimming quality control fastq long reads

Latest version: 0.0.0-6c4ed3a

Total downloads: 2

Source: nf-core/modules

Authors: @Lupphes @eit-maxlcummins

Maintainers: @Lupphes

Perform adapter/quality trimming and QC on long sequencing reads (ONT, PacBio, etc.)

Add the following snippet to your workflow script to include this module.

include { FASTPLONG } from 'nf-core/fastplong'

MIT License

Process

`Name`	`FASTPLONG`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information. Use 'single_end: true' for single-end reads. e.g. [ id:'test', single_end:true ]
`reads` file	Input FASTQ file. Gzip-compressed files are supported. `*.{fastq.gz,fastq}`

`adapter_fasta` file	Optional FASTA file containing adapter sequences to trim. `*.{fasta,fa,fna}`

`discard_trimmed_pass` boolean	If true, no reads that pass trimming thresholds will be written. Only reports will be generated.

`save_trimmed_fail` boolean	If true, reads that fail filtering will be saved to a file ending in `*.fail.fastq.gz`.

Output 6 channels

#1 log tuple

`meta` map	Sample information map
`*.log` file	Log file generated during trimming `*.log`

#2 html tuple

`meta` map	Sample information map
`*.html` file	QC report in HTML format `*.html`

#3 json tuple

`meta` map	Sample information map
`*.json` file	QC report in JSON format `*.json`

#4 reads tuple

`meta` map	Sample information map
`*.fastplong.fastq.gz` file	Trimmed and filtered reads `*fastplong.fastq.gz`

#5 reads_fail tuple

`meta` map	Sample information map
`*.fail.fastq.gz` file	Reads that failed quality/trimming filters `*fail.fastq.gz`

#6 versions_fastplong tuple

`${task.process}` string	The name of the process
`fastplong` string	The name of the tool
`fastplong --version 2>&1 \| sed -e "s/fastplong //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
fastplong	Ultra-fast preprocessing and quality control for long-read sequencing data.	https://github.com/OpenGene/fastplong/blob/v0.4.1/README.md

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:16:50 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Ffastplong/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fastplong/blobs/sha256:50e38077c43f836ca6e55270812d407b1ced56036e8ac5ca9295779d27aef6b1
Size	3.3 KB
Checksum	sha256:50e38077c43f836ca6e55270812d407b1ced56036e8ac5ca9295779d27aef6b1
Downloads	1