nf-core/flash @ 0.0.0-6c4ed3a
Summary
Perform merging of mate paired-end sequencing reads
Get started
Add the following snippet to your workflow script to include this module.
include { FLASH } from 'nf-core/flash'
License
MIT License
Process
Name
|
FLASH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 2; i.e., paired-end data. *fastq.gz
|
Output
4 channels
#1
merged
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.extendedFrags.fastq.gz
file
|
The merged fastq reads .extendedFrags.fastq.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
histogram
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.hist
file
|
HistogramNumeric histogram of merged read lengths. .hist
|
#4
notcombined
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.notCombined_*.fastq.gz
file
|
Not combined reads from flash .notCombined_*.fastq.gz
|
| Tool | Description | Homepage |
|---|---|---|
| flash | Merge mates from fragments that are shorter than twice the read length | https://ccb.jhu.edu/software/FLASH/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:17:30 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fflash/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/flash/blobs/sha256:9b2ff00dae3ef4df3dbd70bf773dc1ed62e9a80b0f9b62c741eddcb13892d35d |
| Size | 2.5 KB |
| Checksum | sha256:9b2ff00dae3ef4df3dbd70bf773dc1ed62e9a80b0f9b62c741eddcb13892d35d |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:30 (UTC) | 4 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:15 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:18 (UTC) | 3 | 2.5 KB |