Nextflow Registry | nf-core/galah@0.0.0-6c4ed3a

nf-core/galah @ 0.0.0-6c4ed3a

Cluster genome FASTA files by average nucleotide identity

genomics cluster genome metagenomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @prototaxites

Maintainers: @prototaxites

Cluster genome FASTA files by average nucleotide identity

Add the following snippet to your workflow script to include this module.

include { GALAH } from 'nf-core/galah'

MIT License

Process

`Name`	`GALAH`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`bins` file	A list of fasta-formatted genomes for dereplication `*.{fa,fna,fa.gz, etc}`
`qc_table` file	(optional) A summary TSV from either CheckM [https://nf-co.re/modules/checkm_lineagewf], CheckM2 [https://nf-co.re/modules/checkm2_predict/], or a CSV in drep-style format [https://github.com/MrOlm/drep] with three columnns, `genome,completeness,contamination`. In both cases the first column should contain the names of the input genome files, minus the last file extension (i.e. if the genome is gzipped, the genome name should retain the .fasta extension). `*.{csv,tsv}`
`qc_format` string	Defines the type if input table in `qc_table`, if specified. `checkm\|checkm2\|genome_info`

Output 3 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.tsv` file	TSV file in the format `representative_genome` \t `member_genome` `*.tsv`

#2 versions_galah tuple

`${task.process}` string	The name of the process
`galah` string	The name of the tool
`galah --version \| sed "s/galah //"` eval	The expression to obtain the version of the tool

#3 dereplicated_bins tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`${prefix}/*` file	The representative genomes following dereplication by galah. `*`

Tool	Description	Homepage
galah	Galah aims to be a more scalable metagenome assembled genome (MAG) dereplication method.	https://github.com/wwood/galah

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:18:00 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fgalah/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/galah/blobs/sha256:43caae0ae7e3d4664f64a3ce21a67404307eeb8abb66753062f157877eb32d9e
Size	3.4 KB
Checksum	sha256:43caae0ae7e3d4664f64a3ce21a67404307eeb8abb66753062f157877eb32d9e
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:18:00 (UTC)	3	3.4 KB
0.0.0-3fc6d40	22 Apr 2026 15:12:39 (UTC)	4	3.4 KB
0.0.0-0c7146d	08 Apr 2026 19:02:02 (UTC)	3	3.4 KB