nf-core/gatk4/calibratedragstrmodel @ 0.0.0-6c4ed3a
Summary
estimates the parameters for the DRAGstr model
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_CALIBRATEDRAGSTRMODEL } from 'nf-core/gatk4/calibratedragstrmodel'
License
MIT License
Process
Name
|
GATK4_CALIBRATEDRAGSTRMODEL |
|---|
Input
5 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
bam_index
file
|
index of the BAM/CRAM/SAM file *.{bai,crai,sai}
|
fasta
file
|
The reference FASTA file *.{fasta,fa}
|
|---|
fasta_fai
file
|
The index of the reference FASTA file *.fai
|
|---|
dict
file
|
The sequence dictionary of the reference FASTA file *.dict
|
|---|
strtablefile
file
|
The StrTableFile zip folder of the reference FASTA file *.zip
|
|---|
Output
2 channels
#1
dragstr_model
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
The DragSTR model *.txt
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4). Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:18:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fcalibratedragstrmodel/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gatk4/calibratedragstrmodel/blobs/sha256:f40c1d4671b81f34c22a4091701740034472c78f4db5699df4d5778d5427486a |
| Size | 3.7 KB |
| Checksum | sha256:f40c1d4671b81f34c22a4091701740034472c78f4db5699df4d5778d5427486a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:18:28 (UTC) | 3 | 3.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:02:42 (UTC) | 3 | 3.7 KB |