nf-core/gridss/annotate @ 0.0.0-6c4ed3a
Summary
Annotates single breakends in a GRIDSS VCF with RepeatMasker annotations using gridss_annotate_vcf_repeatmasker.
Get started
Add the following snippet to your workflow script to include this module.
include { GRIDSS_ANNOTATE } from 'nf-core/gridss/annotate'
License
MIT License
Process
Name
|
GRIDSS_ANNOTATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
vcf
file
|
Input VCF file generated with GRIDSS *.{vcf,vcf.gz}
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
*.vcf.gz
file
|
Annotated VCF file compressed with bgzip *.vcf.gz
|
#2
versions_gridss
tuple
${task.process}
string
|
The process |
|---|---|
gridss
string
|
The tool name |
GeneratePonBedpe --version 2>&1 | sed 's/-gridss//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gridss | GRIDSS: the Genomic Rearrangement IDentification Software Suite | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:22:00 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgridss%2Fannotate/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gridss/annotate/blobs/sha256:47f1bb100d22c7d2170f9ba7eb086742965b098641fcef9b490a85a2a7d7c4ee |
| Size | 2.3 KB |
| Checksum | sha256:47f1bb100d22c7d2170f9ba7eb086742965b098641fcef9b490a85a2a7d7c4ee |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:22:00 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:14:28 (UTC) | 2 | 2.4 KB | |
| 0.0.0-c24122a | 11 Apr 2026 15:00:20 (UTC) | 2 | 2.3 KB | |
| 0.0.0-56a9b6d | 10 Apr 2026 15:00:39 (UTC) | 3 | 2.3 KB |