nf-core/gtfsort @ 0.0.0-6c4ed3a
Summary
Sort GTF files in chr/pos/feature order
Get started
Add the following snippet to your workflow script to include this module.
include { GTFSORT } from 'nf-core/gtfsort'
License
MIT License
Process
Name
|
GTFSORT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gtf
file
|
Unsorted GTF/GFF file. *.{gff,gtf}
|
Output
2 channels
#1
gtf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.sorted.${gtf.extension}
file
|
Sorted GTF file *.{gff,gtf}
|
#2
versions_gtfsort
tuple
${task.process}
string
|
Name of the process |
|---|---|
gtfsort
string
|
Name of the tool |
gtfsort --version |& sed "s/gtfsort //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gtfsort | A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm. | https://github.com/alejandrogzi/gtfsort |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:23:09 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgtfsort/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gtfsort/blobs/sha256:6e6ada9702f9089c81bdeb25ff9630beaac3ca8f1341c567b218848f3573ce6f |
| Size | 2.1 KB |
| Checksum | sha256:6e6ada9702f9089c81bdeb25ff9630beaac3ca8f1341c567b218848f3573ce6f |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:09 (UTC) | 4 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:15:44 (UTC) | 3 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:07:23 (UTC) | 3 | 2.1 KB |