nf-core/macse/refinealignment @ 0.0.0-6c4ed3a
Summary
improves the input nucleotide alignment in a codon-aware manner
Get started
Add the following snippet to your workflow script to include this module.
include { MACSE_REFINEALIGNMENT } from 'nf-core/macse/refinealignment'
License
MIT License
Process
Name
|
MACSE_REFINEALIGNMENT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Aligned sequences in FASTA format. May be gzipped or uncompressed. *.{fa,fas,fasta,aln}
|
Output
3 channels
#1
aa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_AA.{fa,fas,fasta,aln}
file
|
Aligned sequences in FASTA format. May be gzipped or uncompressed. *_AA.{fa,fas,fasta,aln}
|
#2
nt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_NT.{fa,fas,fasta,aln}
file
|
Aligned sequences in FASTA format. May be gzipped or uncompressed. *_NT.{fa,fas,fasta,aln}
|
#3
versions_macse
tuple
${task.process}
string
|
The name of the process |
|---|---|
macse
string
|
The name of the tool |
macse --version | sed -n 's/.*V\([0-9]*\.[0-9]*\).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| macse | MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons. | https://www.agap-ge2pop.org/macse/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:28:16 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmacse%2Frefinealignment/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/macse/refinealignment/blobs/sha256:13e95195a9d2084a09dc42d85abeb643d66075663785a7333223c1b80297e8cf |
| Size | 2.5 KB |
| Checksum | sha256:13e95195a9d2084a09dc42d85abeb643d66075663785a7333223c1b80297e8cf |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:28:16 (UTC) | 1 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:46 (UTC) | 1 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:14:53 (UTC) | 1 | 2.5 KB |