nf-core/mashtree @ 0.0.0-6c4ed3a
Summary
Quickly create a tree using Mash distances
Get started
Add the following snippet to your workflow script to include this module.
include { MASHTREE } from 'nf-core/mashtree'
License
MIT License
Process
Name
|
MASHTREE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
seqs
file
|
FASTA, FASTQ, GenBank, or Mash sketch files *.{fna,fna.gz,fasta,fasta.gz,fa,fa.gz,gbk,gbk.gz,fastq.gz,msh}
|
Output
3 channels
#1
tree
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.dnd
file
|
A Newick formatted tree file *.{dnd}
|
#2
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
A TSV matrix of pair-wise Mash distances *.{tsv}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mashtree | Create a tree using Mash distances | https://github.com/lskatz/mashtree |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:29:36 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmashtree/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mashtree/blobs/sha256:d6ce97111ec689ede6827999806c102da7e72ec5a3aa24c2390af4fb95b4b06d |
| Size | 2.4 KB |
| Checksum | sha256:d6ce97111ec689ede6827999806c102da7e72ec5a3aa24c2390af4fb95b4b06d |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:29:36 (UTC) | 2 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:04 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:16:21 (UTC) | 3 | 2.3 KB |