nf-core/maxquant/lfq @ 0.0.0-6c4ed3a
Summary
Run standard proteomics data analysis with MaxQuant, mostly dedicated to label-free. Paths to fasta and raw files needs to be marked by "PLACEHOLDER"
Get started
Add the following snippet to your workflow script to include this module.
include { MAXQUANT_LFQ } from 'nf-core/maxquant/lfq'
License
MIT License
Process
Name
|
MAXQUANT_LFQ |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
fasta file with protein sequences *.{fasta}
|
paramfile
file
|
MaxQuant parameter file |
raw
file
|
raw files with mass spectra *.{raw,RAW,Raw}
|
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software version versions.yml
|
|---|
#2
maxquant_txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/*.txt
file
|
tables with peptides and protein information *.{txt}
|
| Tool | Description | Homepage |
|---|---|---|
| maxquant | MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. License restricted. | https://www.maxquant.org/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:29:39 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmaxquant%2Flfq/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/maxquant/lfq/blobs/sha256:56962e6f97a661b592364b41fab87533189d0f3f776d1d9ae916e8f52a416597 |
| Size | 2.9 KB |
| Checksum | sha256:56962e6f97a661b592364b41fab87533189d0f3f776d1d9ae916e8f52a416597 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:29:39 (UTC) | 3 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:08 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:16:26 (UTC) | 2 | 2.9 KB |