Nextflow Registry | nf-core/merqury/hapmers@0.0.0-6c4ed3a

nf-core/merqury/hapmers @ 0.0.0-6c4ed3a

A script to generate hap-mer dbs for trios

genomics quality check qc kmer

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

A script to generate hap-mer dbs for trios

Add the following snippet to your workflow script to include this module.

include { MERQURY_HAPMERS } from 'nf-core/merqury/hapmers'

MIT License

Process

`Name`	`MERQURY_HAPMERS`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`child_meryl` directory	Childs' k-mers (all, from WGS reads) `*.meryl`

`maternal_meryl` directory	Haplotype1 k-mers (all, ex. maternal) `*.meryl`

`paternal_meryl` directory	Haplotype2 k-mers (all, ex. paternal) `*.meryl`

Output 6 channels

#1 mat_hapmer_meryl tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*_mat.hapmer.meryl` directory	Inherited maternal hap-mer dbs `*_mat.hapmer.meryl`

#2 pat_hapmer_meryl tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*_pat.hapmer.meryl` directory	Inherited paternal hap-mer dbs `*_pat.hapmer.meryl`

#3 versions_merqury tuple

`${task.process}` string	The name of the process
`merqury` string	The name of the tool
`"1.3"` string	The expression to obtain the version of the tool

#4 inherited_hapmers_fl_png tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*_inherited_hapmers.fl.png` file	k-mer distribution of the inherited dbs and cutoffs used to generate hap-mer dbs `*_inherited_hapmers.fl.png`

#5 inherited_hapmers_ln_png tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*_inherited_hapmers.ln.png` file	k-mer distribution of the inherited dbs and cutoffs used to generate hap-mer dbs `*_inherited_hapmers.ln.png`

#6 inherited_hapmers_st_png tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*_inherited_hapmers.st.png` file	k-mer distribution of the inherited dbs and cutoffs used to generate hap-mer dbs `*_inherited_hapmers.st.png`

Tool	Description	Homepage
merqury	Evaluate genome assemblies with k-mers and more.	n/a

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:29:53 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fmerqury%2Fhapmers/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/merqury/hapmers/blobs/sha256:3f679258236cc40d20d164129f33c3e7d1cfbc45672e59d10e247dd477b66926
Size	3.0 KB
Checksum	sha256:3f679258236cc40d20d164129f33c3e7d1cfbc45672e59d10e247dd477b66926
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a