Nextflow Registry | nf-core/molkartgarage/clahe@0.0.0-0c7146d

nf-core/molkartgarage/clahe @ 0.0.0-0c7146d

Contrast-limited adjusted histogram equalization (CLAHE) on single-channel tif images.

clahe image_processing imaging correction

Latest version: 0.0.0-0c7146d

Total downloads: 4

Source: nf-core/modules

Authors: @kbestak

Maintainers: @kbestak

Contrast-limited adjusted histogram equalization (CLAHE) on single-channel tif images.

Add the following snippet to your workflow script to include this module.

include { MOLKARTGARAGE_CLAHE } from 'nf-core/molkartgarage/clahe'

MIT License

Process

`Name`	`MOLKARTGARAGE_CLAHE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1']`
`image` file	Single-channel tiff file to be corrected. `*.{tif,tiff}`

Output 3 channels

#1 img_clahe tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1']`
`*.tiff` file	CLAHE corrected tiff file. `*.{tiff}`

#2 versions_clahe tuple

`${task.process}` string	The name of the process
`clahe` string	The name of the tool
`python /local/scripts/molkart_clahe.py --version` eval	The expression to obtain the version of the tool

#3 versions_scikitimage tuple

`${task.process}` string	The name of the process
`scikit-image` string	The name of the tool
`python -c 'import skimage; print(skimage.__version__)'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
molkartgarage	One-stop-shop for scripts and tools for processing data for molkart and spatial omics pipelines.	https://github.com/SchapiroLabor/molkart-local/tree/main

Version	0.0.0-0c7146d
Commit ID	0c7146d85582628b5d1034504702fa808632b1af
Release Date	08 Apr 2026 19:19:52 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fmolkartgarage%2Fclahe/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/molkartgarage/clahe/blobs/sha256:ab2e75539b2e19bb1f8b84b358d69dd9b3febcb477ed59aa7f079f6eef8743e5
Size	2.4 KB
Checksum	sha256:ab2e75539b2e19bb1f8b84b358d69dd9b3febcb477ed59aa7f079f6eef8743e5
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-0c7146d	08 Apr 2026 19:19:52 (UTC)		4	2.4 KB