nf-core/odgi/sort @ 0.0.0-6c4ed3a
Summary
Apply different kind of sorting algorithms to a graph. The most prominent one is the PG-SGD sorting algorithm.
Get started
Add the following snippet to your workflow script to include this module.
include { ODGI_SORT } from 'nf-core/odgi/sort'
License
MIT License
Process
Name
|
ODGI_SORT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
graph
file
|
Pangenome graph in GFA v1.0 format or in ODGI binary format *.{gfa,og}
|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
sorted_graph
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.og
file
|
1D sorted pangenome graph in ODGI binary format *.{og}
|
| Tool | Description | Homepage |
|---|---|---|
| odgi | An optimized dynamic genome/graph implementation | https://github.com/pangenome/odgi |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:33:27 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fodgi%2Fsort/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/odgi/sort/blobs/sha256:1c42d3d197aa85d8ed482829f2fa03b3eef25b81476fe02b5db4d47d6c4733b1 |
| Size | 2.1 KB |
| Checksum | sha256:1c42d3d197aa85d8ed482829f2fa03b3eef25b81476fe02b5db4d47d6c4733b1 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:33:27 (UTC) | 4 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:23:53 (UTC) | 4 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:21:54 (UTC) | 3 | 2.1 KB |