nf-core/perbase @ 0.0.0-6c4ed3a
Summary
Per-base metrics on BAM/CRAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { PERBASE } from 'nf-core/perbase'
License
MIT License
Process
Name
|
PERBASE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Sorted BAM/CRAM file *.{bam,cram}
|
index
file
|
BAI/CRAI file *.{bai,crai}
|
bed
file
|
bed file containing regions of interest, where only bases from the given regions will be reported *.{bed}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fasta
file
|
Reference fasta (optional) *.{fasta,fa}
|
fai
file
|
FAI file (optional) *.{fai}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv.gz
file
|
TSV file *.{tsv.gz}
|
#2
versions_perbase
tuple
${task.process}
string
|
The name of the process |
|---|---|
perbase
string
|
The name of the tool |
perbase --version |& sed "1!d ; s/perbase //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| perbase | Per-base metrics on BAM/CRAM files. | https://github.com/sstadick/perbase |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:35:36 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fperbase/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/perbase/blobs/sha256:9eda7e5584d87cb6616476a21d4544685c3d7106032ea95c63f549d0758662aa |
| Size | 3.0 KB |
| Checksum | sha256:9eda7e5584d87cb6616476a21d4544685c3d7106032ea95c63f549d0758662aa |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:35:36 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:25:01 (UTC) | 4 | 3.0 KB |