nf-core/propr/logratio @ 0.0.0-6c4ed3a
Summary
Transform the data matrix using centered logratio transformation (CLR) or additive logratio transformation (ALR)
Get started
Add the following snippet to your workflow script to include this module.
include { PROPR_LOGRATIO } from 'nf-core/propr/logratio'
License
MIT License
Name
|
PROPR_LOGRATIO |
|---|
meta
map
|
Groovy Map containing additional information. meta.id can be used to name the output files. [id: 'test', ...] |
|---|---|
count
file
|
Count matrix, where rows = variables or genes, columns = samples or cells. This matrix should not contain zeros. Otherwise, they will be first replaced by the minimum value. You may want to handle the zeros with a different method beforehand. *.{csv,tsv}
|
logratio
tuple
meta
map
|
Groovy Map containing additional information. meta.id can be used to name the output files. [id: 'test', ...] |
|---|---|
*.logratio.tsv
file
|
ALR/CLR transformed data matrix. With rows = variables or genes, columns = samples or cells. *.logratio.tsv
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
session_info
tuple
meta
map
|
Groovy Map containing additional information. meta.id can be used to name the output files. [id: 'test', ...] |
|---|---|
*.R_sessionInfo.log
file
|
dump of R SessionInfo *.R_sessionInfo.log
|
| Tool | Description | Homepage |
|---|---|---|
| propr | Logratio methods for omics data | https://github.com/tpq/propr |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:38:36 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpropr%2Flogratio/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/propr/logratio/blobs/sha256:1cd4bd1f45fff60e9a29a2aed63f45882b6620303b01e0f40ed9ef78535a5792 |
| Size | 6.0 KB |
| Checksum | sha256:1cd4bd1f45fff60e9a29a2aed63f45882b6620303b01e0f40ed9ef78535a5792 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:36 (UTC) | 4 | 6.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:36 (UTC) | 3 | 6.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:28:37 (UTC) | 2 | 6.0 KB |