nf-core/rasusa @ 0.0.0-6c4ed3a
Summary
Randomly subsample sequencing reads to a specified coverage
Get started
Add the following snippet to your workflow script to include this module.
include { RASUSA } from 'nf-core/rasusa'
License
MIT License
Process
Name
|
RASUSA |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input paired-end FastQ files |
genome_size
string
|
Genome size of the species |
depth_cutoff
integer
|
Depth of coverage cutoff |
|---|
Output
2 channels
#1
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
Reads with subsampled coverage *.fastq.gz
|
#2
versions_rasusa
tuple
${task.process}
string
|
The name of the process |
|---|---|
rasusa
string
|
The name of the tool |
rasusa --version 2>&1 | sed -e "s/rasusa //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rasusa | Randomly subsample sequencing reads to a specified coverage | https://github.com/mbhall88/rasusa |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:40:29 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frasusa/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rasusa/blobs/sha256:a0cc8951fd5ba0ca5a1f575573c186cc5ac095c0909b2923e856156aefc6f1c5 |
| Size | 2.3 KB |
| Checksum | sha256:a0cc8951fd5ba0ca5a1f575573c186cc5ac095c0909b2923e856156aefc6f1c5 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:40:29 (UTC) | 4 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:28:43 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:30:18 (UTC) | 4 | 2.3 KB |