nf-core/rmarkdownnotebook @ 0.0.0-6c4ed3a
Summary
Render an rmarkdown notebook. Supports parametrization.
Get started
Add the following snippet to your workflow script to include this module.
include { RMARKDOWNNOTEBOOK } from 'nf-core/rmarkdownnotebook'
License
MIT License
Name
|
RMARKDOWNNOTEBOOK |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
notebook
file
|
Rmarkdown file *.{Rmd}
|
parameters
map
|
Groovy map with notebook parameters which will be passed to rmarkdown to generate parametrized reports. |
|---|
input_files
file
|
One or multiple files serving as input data for the notebook. *
|
|---|
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.html
file
|
HTML report generated from Rmarkdown *.html
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
artifacts
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
artifacts/*
file
|
Artifacts generated by the notebook artifacts/*
|
session_info
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
session_info.log
file
|
dump of R SessionInfo *.log
|
parameterised_notebook
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.parameterised.Rmd
file
|
Parameterised Rmarkdown file *.parameterised.Rmd
|
| Tool | Description | Homepage |
|---|---|---|
| rmarkdown | Dynamic Documents for R | https://rmarkdown.rstudio.com/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:41:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frmarkdownnotebook/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rmarkdownnotebook/blobs/sha256:8d487e103844a6223e164fb06d90584ad7f7e3a4e0d43e3ff63c81a217b0aaa6 |
| Size | 3.9 KB |
| Checksum | sha256:8d487e103844a6223e164fb06d90584ad7f7e3a4e0d43e3ff63c81a217b0aaa6 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:04 (UTC) | 3 | 3.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:29:08 (UTC) | 3 | 3.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:31:52 (UTC) | 2 | 3.9 KB |