nf-core/scvitools/solo @ 0.0.0-6c4ed3a
Summary
Detect doublets in single-cell RNA-Seq data
Get started
Add the following snippet to your workflow script to include this module.
include { SCVITOOLS_SOLO } from 'nf-core/scvitools/solo'
License
MIT License
Process
Name
|
SCVITOOLS_SOLO |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
h5ad
file
|
H5AD anndata object *.h5ad
|
batch_key
string
|
Column in adata.obs to use as batch. If not provided, the entire dataset is treated as a single batch. |
|---|
max_epochs
integer
|
Maximum number of epochs to train the model. Defaults to the heuristic default. |
|---|
Output
3 channels
#1
h5ad
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.h5ad
file
|
H5AD anndata object without doublets *.h5ad
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
predictions
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.pkl
file
|
pandas dataframe containing the doublet classification *.pkl
|
| Tool | Description | Homepage |
|---|---|---|
| scvitools | A scalable toolkit for probabilistic modeling applied to single-cell omics data | https://scvi-tools.org |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:43:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fscvitools%2Fsolo/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/scvitools/solo/blobs/sha256:c362714dcc5f9fb111bc8fd16b3a5f62db2926f397432f9444c2426a6d88540e |
| Size | 3.5 KB |
| Checksum | sha256:c362714dcc5f9fb111bc8fd16b3a5f62db2926f397432f9444c2426a6d88540e |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:43:43 (UTC) | 3 | 3.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:35:25 (UTC) | 3 | 3.4 KB |