nf-core/seqkit/fq2fa @ 0.0.0-6c4ed3a
Summary
Convert FASTQ to FASTA format
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_FQ2FA } from 'nf-core/seqkit/fq2fa'
License
MIT License
Process
Name
|
SEQKIT_FQ2FA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastq
file
|
Sequence file in fastq format *.{fastq,fq}.gz
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.fa.gz
file
|
Sequence file in fasta format *.{fasta,fa}.gz
|
#2
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen. | https://github.com/shenwei356/seqkit |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:44:24 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Ffq2fa/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqkit/fq2fa/blobs/sha256:2ce3702c3d39d64e0e2c8b5581469a7668c996b14f76a58d9dedf5dcb6809ee4 |
| Size | 2.2 KB |
| Checksum | sha256:2ce3702c3d39d64e0e2c8b5581469a7668c996b14f76a58d9dedf5dcb6809ee4 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:24 (UTC) | 4 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:18 (UTC) | 1 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:30 (UTC) | 3 | 2.2 KB |