nf-core/seqkit/sana @ 0.0.0-6c4ed3a
Summary
Sanitize broken single line FASTQ files
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_SANA } from 'nf-core/seqkit/sana'
License
MIT License
Process
Name
|
SEQKIT_SANA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information. e.g. [ id:'sample1'] |
|---|---|
reads
file
|
One line for each sequence and quality value *.{fq,fastq}{,.gz}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information. e.g. [ id:'sample1'] |
|---|---|
${prefix}.log
file
|
Log file produced by the seqkit/sana software *.log
|
#2
reads
tuple
meta
map
|
Groovy Map containing sample information. e.g. [ id:'sample1'] |
|---|---|
${prefix}${extension}
file
|
Parsed fastq file without malformed entries/lines *.${extension}
|
#3
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation. | https://bioinf.shenwei.me/seqkit |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:44:33 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Fsana/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqkit/sana/blobs/sha256:99c28d68424c74ef6d2c5744a77efc894e61cd12ed1184c0f90ce7c92bac8814 |
| Size | 2.5 KB |
| Checksum | sha256:99c28d68424c74ef6d2c5744a77efc894e61cd12ed1184c0f90ce7c92bac8814 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:33 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:27 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:43 (UTC) | 3 | 2.5 KB |