Nextflow Registry | nf-core/svync@0.0.0-6c4ed3a

nf-core/svync @ 0.0.0-6c4ed3a

A tool to standardize VCF files from structural variant callers

structural variants vcf standardization standardize sv

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @nvnieuwk

Maintainers: @nvnieuwk

A tool to standardize VCF files from structural variant callers

Add the following snippet to your workflow script to include this module.

include { SVYNC } from 'nf-core/svync'

MIT License

Process

`Name`	`SVYNC`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`vcf` file	The input VCF file containing structural variants `*.{vcf,vcf.gz}`
`tbi` file	The index of the input VCF file containing structural variants `*.tbi`
`config` file	The config stating how the standardization should happen `*.{yml,yaml}`

Output 3 channels

#1 tbi tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.tbi` file	The index of the standardized VCF file `*.tbi`

#2 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.vcf.gz` file	The standardized VCF file `*.vcf.gz`

#3 versions_svync tuple

`${task.process}` string	The name of the process
`svync` string	The name of the tool
`svync --version \| sed 's/svync version //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
svync	A tool to standardize VCF files from structural variant callers	https://github.com/nvnieuwk/svync

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:49:00 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fsvync/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/svync/blobs/sha256:2034ffcde0273a39c82752fdd8cfb8ff7d286c7583abde14dbf492f793b85cf0
Size	2.8 KB
Checksum	sha256:2034ffcde0273a39c82752fdd8cfb8ff7d286c7583abde14dbf492f793b85cf0
Downloads	4

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:49:00 (UTC)	4	2.8 KB
0.0.0-3fc6d40	22 Apr 2026 15:33:59 (UTC)	3	2.8 KB
0.0.0-0c7146d	08 Apr 2026 19:41:49 (UTC)	2	2.8 KB