Nextflow Modules
Showing module(s) with keyword "count matrix"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| cellgeni/cellranger/count | Process | cellranger 10x single-cell RNA-seq count matrix | Runs Cell Ranger count on 10x single-cell RNA-seq FASTQs to align reads, generate feature-barcode matrices, and produce per-sample output directories. |
| cellgeni/starsolo10x | Process | STARsolo STAR alignment single-cell 10x RNA-seq count matrix | Aligns 10x single-cell RNA-seq FASTQs to a reference genome using STARsolo, producing per-sample output directories with count matrices and summary statistics. |
| nf-core/abundance_differential_filter | Workflow | differential abundance expression count matrix fold-change | A subworkflow for filtering differential abundance results |