Nextflow Modules
Showing module(s) with keyword "genotype likelihoods"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_variant_calling_mpileup_bcftools | Workflow | BAM genotype likelihoods bcftools | Subworkflow to compute genotype likelihoods from BAM files using bcftools/mpileup and bcftools/call variants by chromosomes. The resulting VCF files are then merged by chromosomes and annotated with bcftools/annotate to give an ID for each variants. During samples merging and region concatenation, all metadata will be preserved and stored in the key `metas` at each step. |