Nextflow Modules
Showing module(s) with keyword "metabolic model"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/carveme/carve | Process | metabolic model genome-scale sbml flux balance analysis metabolic reconstruction | Reconstruct genome-scale metabolic models from protein FASTA files using CarveMe |
| nf-core/gapseq/doall | Process | metabolic model gap filling pathway prediction bacteria genome-scale model complete workflow | Complete gapseq workflow from genome to gap-filled model |
| nf-core/gapseq/draft | Process | metabolic model draft reconstruction bacteria genome-scale model | Create draft metabolic model from pathway and transporter predictions |
| nf-core/gapseq/fill | Process | metabolic model gap filling bacteria genome-scale model | Perform gap filling on draft metabolic model |
| nf-core/gapseq/medium | Process | metabolic model growth medium gap filling gapseq bacteria genome-scale model | Predict growth medium from a draft model and pathway predictions |
| nf-core/gapseq/requestdb | Process | database reference sequences metabolic model bacteria archaea | Download gapseq reference sequence database for metabolic pathway prediction |
| nf-core/memote/report | Process | metabolic model sbml quality control | Generate HTML quality report snapshot for genome-scale metabolic models |
| nf-core/memote/run | Process | metabolic model sbml quality control testing | Run memote test suite and collect results as JSON |