Nextflow Modules
Showing module(s) with keyword "pervasive selection"
| Module | Keywords | Description |
|---|---|---|
| nf-core/hyphy/fade | positive selection pervasive selection protein evolution | FADE (FUBAR Aproach to Directional Evolution) is a method that uses a Bayesian framework, based on that introduced by FUBAR ), to test whether sites in a protein alignment are subject to directional selection. |
| nf-core/hyphy/fubar | positive selection pervasive selection gene evolution pathogen evolution large datasets | FUBAR (Fast, Unconstrained Bayesian AppRoximation) uses a Bayesian approach to infer nonsynoymous (dN) and synonymous (dS) substitution rates on a per-site basis for a given coding alignment and corresponding phylogeny. |
| nf-core/hyphy/slac | pervasive selection site selection gene evolution | The Single-Likelihood Ancestor Counting (SLAC) method is used to identify individual codon sites subject to pervasive diversifying or purifying selection. |