Nextflow Modules
Showing module(s) with keyword "somatic structural variations"
| Module | Keywords | Description |
|---|---|---|
| nf-core/nanomonsv/get | structural variants nanopore cancer genome somatic structural variations long reads | Call somatic structural variants with nanomonsv get using tumor/control parse outputs and a reference genome. |
| nf-core/nanomonsv/parse | structural variants nanopore cancer genome somatic structural variations mobile element insertions long reads | Parse all the supporting reads of putative somatic SVs using nanomonsv. After successful completion, you will find supporting reads stratified by deletions, insertions, and rearrangements. A precursor to "nanomonsv get" |