Nextflow Modules
Showing module(s) with keyword "structural variant"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/hiphase | Process | pacbio structural variant phasing pacbio hifi snv haplotagging | Small and structural variant phasing tool for PacBio HiFi reads, supporting co-phasing of SNVs and SVs across multiple BAM files and samples |
| nf-core/octopusv/plot | Process | summary structural variant statistics plot | Plot structural variant statistics using octopusv stat output |
| nf-core/octopusv/plotcircos | Process | structural variant circos plot visualisation | Draw a genome-wide structural variant Circos plot from an OctopuSV SVCF file. |
| nf-core/octopusv/stat | Process | vcf summary structural variant statistics | Summarize structural variant statistics from octopusv SVCF files |
| nf-core/octopusv/svcf2bed | Process | svcf bed structural variant conversion | Converts octopusv SVCF files to the standard BED format |
| nf-core/svanalyzer/svbenchmark | Process | structural variant sv benchmarking | SVbenchmark compares a set of “test” structural variants in VCF format to a known truth set (also in VCF format) and outputs estimates of sensitivity and specificity. |
| nf-core/variantextractor | Process | vcf variant structural variant normalization homogenization | Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files. Homogenizes multiallelic variants, MNPs and SVs (including imprecise paired breakends and single breakends) to facilitate downstream processing. |