Nextflow Modules
Showing module(s) with keyword "structural-variant calling"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cutesv | Process | cutesv structural-variant calling sv | structural-variant calling with cutesv |
| nf-core/saltshaker/call | Process | saltshaker mitosalt mtDNA structural-variant calling | mtDNA deletion and duplication calling downstream of mitosalt |
| nf-core/saltshaker/classify | Process | saltshaker mitosalt mtDNA structural-variant calling | mtDNA deletion and duplication classification downstream of mitosalt |
| nf-core/saltshaker/plot | Process | saltshaker mitosalt mtDNA structural-variant calling | mtDNA deletion and duplication plotting downstream of mitosalt |
| nf-core/sawfish/discover | Process | sawfish structural-variant calling CNV calling Pacbio | SV candidate discovery from PacBio HiFi data |
| nf-core/sawfish/jointcall | Process | sawfish structural-variant calling joint calling CNV calling Pacbio | Joint calling of structural variants from multiple samples using Sawfish |
| nf-core/sniffles | Process | sniffles structural-variant calling long-read | structural-variant calling with sniffles |