Nextflow Modules
Showing module(s) with keyword "variant quality score recalibration"
| Module | Keywords | Description |
|---|---|---|
| nf-core/gatk4/applyvqsr | gatk4 variant quality score recalibration vcf vqsr | Apply a score cutoff to filter variants based on a recalibration table. AplyVQSR performs the second pass in a two-stage process called Variant Quality Score Recalibration (VQSR). Specifically, it applies filtering to the input variants based on the recalibration table produced in the first step by VariantRecalibrator and a target sensitivity value. |