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nf-core/crisprvar

[WIP] Evaluate outcomes from genome editing experiments

Version: 0.0.0-7d00851 Git revision: 7d00851db258fcaa2ac668c5779d3ae576fbf5c2 Commit: Content hash:
Run:
Repository: nf-core/crisprvar
Workflow: main.nf
Website: https://nf-co.re/crisprvar

nf-core/crisprvar

Run CRISPResso on genome editing experiments

Build Status Nextflow

install with bioconda Docker Singularity Container available

Introduction

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

Documentation

The nf-core/crisprvar pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting
Version Git revision Released Status
0.0.0-7d00851 7d00851db258fcaa2ac668c5779d3ae576fbf5c2 12 Oct 2026 16:50:54 (UTC)
Nextflow Registry v0.28.0_c73a300 - 12 Oct 2026 09:32:30 (UTC)