Nextflow Registry | nf-anndata@0.5.3

nf-anndata @ 0.5.3

Provider: Nico Trummer

Claimed: 02 Jan 2026 11:36:20 (UTC)

Description: This plugin allows reading structural properties of AnnData h5ad files in nextflow. Such files are mostly used in single-cell transcriptomics to store sparse count matrices with additional metadata. As the file format is based on the h5 format, it is not necessary to load the entire file into memory, but only parts that are relevant. For example, one can check if a certain layer or obs column is present, without loading the entire count matrix into memory. This is useful in nextflow, because we can implement branching, filtering, and pipeline input validation without having a dedicated process. This plugin is essentially a wrapper around the jhdf package. It provides an interface to the anndata properties that closely resembles the Python implementation, which is what most users will be familiar with. The plugin is limited to reading structural properties and metadata. It does not allow accessing the contents of the count matrices and obsm/varm fields, as this would require a large amount of memory and should thus be done in a dedicated nextflow process. License: MIT

Project URL: https://github.com/nictru/nf-anndata

Latest version: 0.5.3

Total downloads: 34.0K View trends

Nextflow version	>=24.10.0
Depends On	-
Release Date	13 Oct 2026 07:26:46 (UTC)
Release Notes	-
Download URL	https://registry.nextflow.io/api/v1/plugins/nf-anndata/0.5.3/download/nf-anndata-0.5.3.zip
Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/nf-anndata/blobs/sha256:41a640d081e4fd6b0929267d8ffac1d8036a565560a137bed88b8f8064d15358
Size	37.8 MB
Checksum	156149f92f092340ec0edbca5b4946f95041f39c96a870b008f96ec5a05fcf52011390c34c5d5d42f5b71957c5af705dc1e87753ed576768c017ae103ae69383
Total downloads	168 View trends
Security Scan

Version	Nextflow version	Date	Downloads
0.5.3	>=24.10.0	13 Oct 2026 07:26:46 (UTC)	168
0.5.2	>=24.10.0	02 Aug 2026 12:24:02 (UTC)	12.8K
0.5.1	>=24.10.0	02 Jun 2026 06:14:45 (UTC)	72
0.5.0	>=24.10.0	28 May 2026 11:08:18 (UTC)	125
0.4.1	>=24.10.0	29 Mar 2026 08:52:17 (UTC)	157
0.4.0	>=24.10.0	25 Mar 2026 12:31:01 (UTC)	109
0.3.4	>=24.10.0	17 Mar 2026 07:17:44 (UTC)	112
0.3.3	>=24.10.0	16 Mar 2026 20:31:18 (UTC)	112
0.3.2	>=24.10.0	29 Jan 2026 19:22:12 (UTC)	18.2K
0.3.1	>=24.10.0	27 Jan 2026 19:13:43 (UTC)	370
0.3.0	>=24.10.0	19 Jan 2026 21:49:16 (UTC)	535
0.2.3	>=24.10.0	18 Jan 2026 14:23:01 (UTC)	150
0.2.2	>=24.10.0	18 Jan 2026 14:16:41 (UTC)	149
0.2.1	>=24.10.0	18 Jan 2026 14:09:15 (UTC)	149
0.2.0	>=24.10.0	18 Jan 2026 13:11:31 (UTC)	284
0.1.1	>=24.10.0	02 Jan 2026 17:10:19 (UTC)	270
0.1.0	>=24.10.0	02 Jan 2026 15:52:27 (UTC)	176